BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-mature.fasta
2,588 sequences; 55,870 total letters
Query= TTGACCTGGGTGCGCTTTCTGGACAGACTTTACAGCCCCGGGGGCACAGTCGTAGAGAGGGGGCGGGG
C
Length=69
Score E
Sequences producing significant alignments: (Bits) Value
[35590]hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p 21.4 0.44
>[35590]hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p
Length=21
Score = 21.4 bits (11), Expect = 0.44
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 59 GGGGGCGGGGC 69
|||||||||||
Sbjct 2 GGGGGCGGGGC 12
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1244656
Database: homo-mature.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 55,870
Number of sequences in database: 2,588
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5