BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-mature.fasta
2,588 sequences; 55,870 total letters
Query= GTAAGCGCGGAGGTGGGCGAGGGGGACCGAGGCCAGGACTCTCCTTGGGGTTTGGGGGCTTG
Length=62
Score E
Sequences producing significant alignments: (Bits) Value
[54556]hsa-miR-6855-5p MIMAT0027610 Homo sapiens miR-6855-5p 25.1 0.030
[54306]hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p 23.3 0.11
[48305]hsa-miR-4649-5p MIMAT0019711 Homo sapiens miR-4649-5p 21.4 0.38
[35579]hsa-miR-1229-5p MIMAT0022942 Homo sapiens miR-1229-5p 21.4 0.38
>[54556]hsa-miR-6855-5p MIMAT0027610 Homo sapiens miR-6855-5p
Length=25
Score = 25.1 bits (13), Expect = 0.030
Identities = 13/13 (100%), Gaps = 0/13 (0%)
Strand=Plus/Plus
Query 45 TTGGGGTTTGGGG 57
|||||||||||||
Sbjct 1 TTGGGGTTTGGGG 13
>[54306]hsa-miR-6729-3p MIMAT0027360 Homo sapiens miR-6729-3p
Length=21
Score = 23.3 bits (12), Expect = 0.11
Identities = 12/12 (100%), Gaps = 0/12 (0%)
Strand=Plus/Minus
Query 15 GGGCGAGGGGGA 26
||||||||||||
Sbjct 15 GGGCGAGGGGGA 4
>[48305]hsa-miR-4649-5p MIMAT0019711 Homo sapiens miR-4649-5p
Length=24
Score = 21.4 bits (11), Expect = 0.38
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 14 TGGGCGAGGGG 24
|||||||||||
Sbjct 1 TGGGCGAGGGG 11
>[35579]hsa-miR-1229-5p MIMAT0022942 Homo sapiens miR-1229-5p
Length=24
Score = 21.4 bits (11), Expect = 0.38
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 48 GGGTTTGGGGG 58
|||||||||||
Sbjct 8 GGGTTTGGGGG 18
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1089074
Database: homo-mature.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 55,870
Number of sequences in database: 2,588
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5