BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-mature.fasta
2,588 sequences; 55,870 total letters
Query= CTGAAGAGGGTGGGGAAGCAGGGGAGCTGTGCGTGTGTCGGGGCGGGTGGAACCTTAGCGGACCC
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
[44424]hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141 21.4 0.41
[34762]hsa-miR-920 MIMAT0004970 Homo sapiens miR-920 21.4 0.41
[29900]hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p 21.4 0.41
[29137]hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p 21.4 0.41
>[44424]hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141
Length=19
Score = 21.4 bits (11), Expect = 0.41
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 41 GGGCGGGTGGA 51
|||||||||||
Sbjct 3 GGGCGGGTGGA 13
>[34762]hsa-miR-920 MIMAT0004970 Homo sapiens miR-920
Length=20
Score = 21.4 bits (11), Expect = 0.41
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 21 GGGGAGCTGTG 31
|||||||||||
Sbjct 1 GGGGAGCTGTG 11
>[29900]hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p
Length=22
Score = 21.4 bits (11), Expect = 0.41
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 45 GGGTGGAACCT 55
|||||||||||
Sbjct 9 GGGTGGAACCT 19
>[29137]hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p
Length=22
Score = 21.4 bits (11), Expect = 0.41
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 27 CTGTGCGTGTG 37
|||||||||||
Sbjct 1 CTGTGCGTGTG 11
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1155752
Database: homo-mature.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 55,870
Number of sequences in database: 2,588
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5