BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-mature.fasta
2,588 sequences; 55,870 total letters
Query= CGGGTGGAACCTTAGCGGACCCTGGGAGGAGGCTCCCCG
Length=39
Score E
Sequences producing significant alignments: (Bits) Value
[46811]hsa-miR-3680-3p MIMAT0018107 Homo sapiens miR-3680-3p 23.3 0.066
[55066]hsa-miR-7111-3p MIMAT0028120 Homo sapiens miR-7111-3p 21.4 0.24
[34593]hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p 21.4 0.24
[29900]hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p 21.4 0.24
>[46811]hsa-miR-3680-3p MIMAT0018107 Homo sapiens miR-3680-3p
Length=23
Score = 23.3 bits (12), Expect = 0.066
Identities = 14/15 (93%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 18 GACCCTGGGAGGAGG 32
||||||||||| |||
Sbjct 9 GACCCTGGGAGTAGG 23
>[55066]hsa-miR-7111-3p MIMAT0028120 Homo sapiens miR-7111-3p
Length=22
Score = 21.4 bits (11), Expect = 0.24
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 22 CTGGGAGGAGG 32
|||||||||||
Sbjct 22 CTGGGAGGAGG 12
>[34593]hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p
Length=21
Score = 21.4 bits (11), Expect = 0.24
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 22 CTGGGAGGAGG 32
|||||||||||
Sbjct 21 CTGGGAGGAGG 11
>[29900]hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p
Length=22
Score = 21.4 bits (11), Expect = 0.24
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 2 GGGTGGAACCT 12
|||||||||||
Sbjct 9 GGGTGGAACCT 19
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 669978
Database: homo-mature.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 55,870
Number of sequences in database: 2,588
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5