BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-mature.fasta
2,588 sequences; 55,870 total letters
Query= ATTTTCCAGAAGGCACTGCGGGCACGCTTCCTGCCTGGTCGGCCTGAAGGGAAGGGCCAATCCCTGAG
TATCTCGGGAAGGAGGTGTCCGGAGCCGCGGA
Length=100
Score E
Sequences producing significant alignments: (Bits) Value
[49206]hsa-miR-5088-5p MIMAT0021080 Homo sapiens miR-5088-5p 23.3 0.19
[35895]hsa-miR-513c-5p MIMAT0005789 Homo sapiens miR-513c-5p 21.4 0.68
[35893]hsa-miR-513b-5p MIMAT0005788 Homo sapiens miR-513b-5p 21.4 0.68
[32640]hsa-miR-518e-3p MIMAT0002861 Homo sapiens miR-518e-3p 21.4 0.68
>[49206]hsa-miR-5088-5p MIMAT0021080 Homo sapiens miR-5088-5p
Length=24
Score = 23.3 bits (12), Expect = 0.19
Identities = 12/12 (100%), Gaps = 0/12 (0%)
Strand=Plus/Minus
Query 57 CCAATCCCTGAG 68
||||||||||||
Sbjct 17 CCAATCCCTGAG 6
>[35895]hsa-miR-513c-5p MIMAT0005789 Homo sapiens miR-513c-5p
Length=22
Score = 21.4 bits (11), Expect = 0.68
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 78 AAGGAGGTGTC 88
|||||||||||
Sbjct 6 AAGGAGGTGTC 16
>[35893]hsa-miR-513b-5p MIMAT0005788 Homo sapiens miR-513b-5p
Length=22
Score = 21.4 bits (11), Expect = 0.68
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 78 AAGGAGGTGTC 88
|||||||||||
Sbjct 6 AAGGAGGTGTC 16
>[32640]hsa-miR-518e-3p MIMAT0002861 Homo sapiens miR-518e-3p
Length=21
Score = 21.4 bits (11), Expect = 0.68
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 44 CTGAAGGGAAG 54
|||||||||||
Sbjct 17 CTGAAGGGAAG 7
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1933662
Database: homo-mature.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 55,870
Number of sequences in database: 2,588
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5