BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-mature.fasta
2,588 sequences; 55,870 total letters
Query= AGCTGTGCGTGTGTCGGGGCGGGTGGAACCTTAGCGGACCCTGGGAGGAGGCTCCCCGGCCGAACCTG
CCCGACCCTCCCTCCCCCGGCTTGCC
Length=94
Score E
Sequences producing significant alignments: (Bits) Value
[54396]hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p 23.3 0.18
[46811]hsa-miR-3680-3p MIMAT0018107 Homo sapiens miR-3680-3p 23.3 0.18
[58143]hsa-miR-7845-5p MIMAT0030420 Homo sapiens miR-7845-5p 21.4 0.64
[55066]hsa-miR-7111-3p MIMAT0028120 Homo sapiens miR-7111-3p 21.4 0.64
[54521]hsa-miR-6836-3p MIMAT0027575 Homo sapiens miR-6836-3p 21.4 0.64
[48521]hsa-miR-4769-3p MIMAT0019923 Homo sapiens miR-4769-3p 21.4 0.64
[44424]hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141 21.4 0.64
[34593]hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p 21.4 0.64
[29900]hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p 21.4 0.64
[29137]hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p 21.4 0.64
>[54396]hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p
Length=25
Score = 23.3 bits (12), Expect = 0.18
Identities = 12/12 (100%), Gaps = 0/12 (0%)
Strand=Plus/Minus
Query 75 CCTCCCTCCCCC 86
||||||||||||
Sbjct 21 CCTCCCTCCCCC 10
>[46811]hsa-miR-3680-3p MIMAT0018107 Homo sapiens miR-3680-3p
Length=23
Score = 23.3 bits (12), Expect = 0.18
Identities = 14/15 (93%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 37 GACCCTGGGAGGAGG 51
||||||||||| |||
Sbjct 9 GACCCTGGGAGTAGG 23
>[58143]hsa-miR-7845-5p MIMAT0030420 Homo sapiens miR-7845-5p
Length=21
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 71 CGACCCTCCCT 81
|||||||||||
Sbjct 18 CGACCCTCCCT 8
>[55066]hsa-miR-7111-3p MIMAT0028120 Homo sapiens miR-7111-3p
Length=22
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 41 CTGGGAGGAGG 51
|||||||||||
Sbjct 22 CTGGGAGGAGG 12
>[54521]hsa-miR-6836-3p MIMAT0027575 Homo sapiens miR-6836-3p
Length=21
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 79 CCTCCCCCGGC 89
|||||||||||
Sbjct 4 CCTCCCCCGGC 14
>[48521]hsa-miR-4769-3p MIMAT0019923 Homo sapiens miR-4769-3p
Length=22
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 75 CCTCCCTCCCC 85
|||||||||||
Sbjct 9 CCTCCCTCCCC 19
>[44424]hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141
Length=19
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 17 GGGCGGGTGGA 27
|||||||||||
Sbjct 3 GGGCGGGTGGA 13
>[34593]hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p
Length=21
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 41 CTGGGAGGAGG 51
|||||||||||
Sbjct 21 CTGGGAGGAGG 11
>[29900]hsa-miR-370-3p MIMAT0000722 Homo sapiens miR-370-3p
Length=22
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 21 GGGTGGAACCT 31
|||||||||||
Sbjct 9 GGGTGGAACCT 19
>[29137]hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p
Length=22
Score = 21.4 bits (11), Expect = 0.64
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 3 CTGTGCGTGTG 13
|||||||||||
Sbjct 1 CTGTGCGTGTG 11
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1800306
Database: homo-mature.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 55,870
Number of sequences in database: 2,588
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5