BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-mature.fasta
2,588 sequences; 55,870 total letters
Query= AGACTCCACTTCCCGGCGGGTAGTGCGACCCTAGGGGCGGGACTTCATGTCCCAGCAGGCTCCGGGCG
GCGTGCGCC
Length=77
Score E
Sequences producing significant alignments: (Bits) Value
[48343]hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669 25.1 0.039
>[48343]hsa-miR-4669 MIMAT0019749 Homo sapiens miR-4669
Length=22
Score = 25.1 bits (13), Expect = 0.039
Identities = 13/13 (100%), Gaps = 0/13 (0%)
Strand=Plus/Minus
Query 4 CTCCACTTCCCGG 16
|||||||||||||
Sbjct 18 CTCCACTTCCCGG 6
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1422464
Database: homo-mature.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 55,870
Number of sequences in database: 2,588
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5