BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-hairpin.fasta
1,881 sequences; 154,002 total letters
Query= TGGACAGACTTTACAGCCCCGGGGGCACAGTCGTAGAGAGGGGGCG
Length=46
Score E
Sequences producing significant alignments: (Bits) Value
[14360]hsa-mir-500b MI0015903 Homo sapiens miR-500b stem-loop 21.4 1.4
[4581]hsa-mir-922 MI0005714 Homo sapiens miR-922 stem-loop 21.4 1.4
[2966]hsa-mir-502 MI0003186 Homo sapiens miR-502 stem-loop 21.4 1.4
[2964]hsa-mir-500a MI0003184 Homo sapiens miR-500a stem-loop 21.4 1.4
>[14360]hsa-mir-500b MI0015903 Homo sapiens miR-500b stem-loop
Length=79
Score = 21.4 bits (11), Expect = 1.4
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 34 TAGAGAGGGGG 44
|||||||||||
Sbjct 11 TAGAGAGGGGG 1
>[4581]hsa-mir-922 MI0005714 Homo sapiens miR-922 stem-loop
Length=81
Score = 21.4 bits (11), Expect = 1.4
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 22 GGGGCACAGTC 32
|||||||||||
Sbjct 48 GGGGCACAGTC 38
>[2966]hsa-mir-502 MI0003186 Homo sapiens miR-502 stem-loop
Length=86
Score = 21.4 bits (11), Expect = 1.4
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 34 TAGAGAGGGGG 44
|||||||||||
Sbjct 15 TAGAGAGGGGG 5
>[2964]hsa-mir-500a MI0003184 Homo sapiens miR-500a stem-loop
Length=84
Score = 21.4 bits (11), Expect = 1.4
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 34 TAGAGAGGGGG 44
|||||||||||
Sbjct 14 TAGAGAGGGGG 4
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 4085376
Database: homo-hairpin.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 154,002
Number of sequences in database: 1,881
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5