BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-hairpin.fasta
1,881 sequences; 154,002 total letters
Query= GTGGGGAAGCAGGGGAGCTGT
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
[4579]hsa-mir-920 MI0005712 Homo sapiens miR-920 stem-loop 23.3 0.10
[20822]hsa-mir-6786 MI0022631 Homo sapiens miR-6786 stem-loop 21.4 0.37
[14867]hsa-mir-3150b MI0016426 Homo sapiens miR-3150b stem-loop 21.4 0.37
[14497]hsa-mir-3653 MI0016053 Homo sapiens miR-3653 stem-loop 21.4 0.37
>[4579]hsa-mir-920 MI0005712 Homo sapiens miR-920 stem-loop
Length=75
Score = 23.3 bits (12), Expect = 0.10
Identities = 12/12 (100%), Gaps = 0/12 (0%)
Strand=Plus/Plus
Query 10 CAGGGGAGCTGT 21
||||||||||||
Sbjct 49 CAGGGGAGCTGT 60
>[20822]hsa-mir-6786 MI0022631 Homo sapiens miR-6786 stem-loop
Length=113
Score = 21.4 bits (11), Expect = 0.37
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 10 CAGGGGAGCTG 20
|||||||||||
Sbjct 44 CAGGGGAGCTG 34
>[14867]hsa-mir-3150b MI0016426 Homo sapiens miR-3150b stem-loop
Length=86
Score = 21.4 bits (11), Expect = 0.37
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 3 GGGGAAGCAGG 13
|||||||||||
Sbjct 84 GGGGAAGCAGG 74
>[14497]hsa-mir-3653 MI0016053 Homo sapiens miR-3653 stem-loop
Length=110
Score = 21.4 bits (11), Expect = 0.37
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Minus
Query 2 TGGGGAAGCAG 12
|||||||||||
Sbjct 106 TGGGGAAGCAG 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1036392
Database: homo-hairpin.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 154,002
Number of sequences in database: 1,881
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5