BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-hairpin.fasta
1,881 sequences; 154,002 total letters
Query= GCCCCCGGACTACATTTTCCAGAA
Length=24
Score E
Sequences producing significant alignments: (Bits) Value
[5227]hsa-mir-1250 MI0006385 Homo sapiens miR-1250 stem-loop 21.4 0.50
>[5227]hsa-mir-1250 MI0006385 Homo sapiens miR-1250 stem-loop
Length=113
Score = 21.4 bits (11), Expect = 0.50
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 12 ACATTTTCCAG 22
|||||||||||
Sbjct 63 ACATTTTCCAG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1425039
Database: homo-hairpin.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 154,002
Number of sequences in database: 1,881
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5