BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-hairpin.fasta
1,881 sequences; 154,002 total letters
Query= AAGGGCCAATCCCTGAGTATC
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
[16402]hsa-mir-5088 MI0017977 Homo sapiens miR-5088 stem-loop 23.3 0.10
>[16402]hsa-mir-5088 MI0017977 Homo sapiens miR-5088 stem-loop
Length=79
Score = 23.3 bits (12), Expect = 0.10
Identities = 12/12 (100%), Gaps = 0/12 (0%)
Strand=Plus/Minus
Query 6 CCAATCCCTGAG 17
||||||||||||
Sbjct 22 CCAATCCCTGAG 11
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 1036392
Database: homo-hairpin.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 154,002
Number of sequences in database: 1,881
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5