BLASTN 2.3.0+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.
Database: homo-hairpin.fasta
1,881 sequences; 154,002 total letters
Query= CAAAACCCTCCATGGTTTACAGAACCCTTTTAAGAACTGTAAGCCTTGTGAGGTTCGGCAGGTGTTAT
TTTCCTCTTTGCAGTTGGGAAACTGAAG
Length=96
Score E
Sequences producing significant alignments: (Bits) Value
[15243]hsa-mir-4460 MI0016806 Homo sapiens miR-4460 stem-loop 25.1 0.28
[761]hsa-mir-323a MI0000807 Homo sapiens miR-323a stem-loop 23.3 1.0
[15295]hsa-mir-4496 MI0016858 Homo sapiens miR-4496 stem-loop 21.4 3.6
[5257]hsa-mir-302e MI0006417 Homo sapiens miR-302e stem-loop 21.4 3.6
[407]hsa-mir-15b MI0000438 Homo sapiens miR-15b stem-loop 21.4 3.6
>[15243]hsa-mir-4460 MI0016806 Homo sapiens miR-4460 stem-loop
Length=86
Score = 25.1 bits (13), Expect = 0.28
Identities = 13/13 (100%), Gaps = 0/13 (0%)
Strand=Plus/Plus
Query 71 TCCTCTTTGCAGT 83
|||||||||||||
Sbjct 35 TCCTCTTTGCAGT 47
>[761]hsa-mir-323a MI0000807 Homo sapiens miR-323a stem-loop
Length=86
Score = 23.3 bits (12), Expect = 1.0
Identities = 12/12 (100%), Gaps = 0/12 (0%)
Strand=Plus/Plus
Query 72 CCTCTTTGCAGT 83
||||||||||||
Sbjct 67 CCTCTTTGCAGT 78
>[15295]hsa-mir-4496 MI0016858 Homo sapiens miR-4496 stem-loop
Length=61
Score = 21.4 bits (11), Expect = 3.6
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 86 GGAAACTGAAG 96
|||||||||||
Sbjct 42 GGAAACTGAAG 52
>[5257]hsa-mir-302e MI0006417 Homo sapiens miR-302e stem-loop
Length=72
Score = 21.4 bits (11), Expect = 3.6
Identities = 22/27 (81%), Gaps = 1/27 (4%)
Strand=Plus/Minus
Query 71 TCC-TCTTTGCAGTTGGGAAACTGAAG 96
||| |||| |||| |||||||||||
Sbjct 46 TCCATCTTACCAGTAAGGAAACTGAAG 20
>[407]hsa-mir-15b MI0000438 Homo sapiens miR-15b stem-loop
Length=98
Score = 21.4 bits (11), Expect = 3.6
Identities = 11/11 (100%), Gaps = 0/11 (0%)
Strand=Plus/Plus
Query 11 CATGGTTTACA 21
|||||||||||
Sbjct 31 CATGGTTTACA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10188747
Database: homo-hairpin.fasta
Posted date: Sep 23, 2016 6:16 PM
Number of letters in database: 154,002
Number of sequences in database: 1,881
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5